Tag: Small molecules NMR

  • “Dark” phosphate no longer dark?

    Jiaqi Lu – @Jiaqi_Lu22

    Our research has unveiled the existence of hidden phosphate clusters, eluding spectroscopic detection. By manipulating solution conditions, notably pH, we expose their intricate behavior. Employing the power of chemical exchange saturation transfer, we discover new spectroscopic features, and provide further evidence for clustering. These results are important for studying phosphate function in the physiological environment.

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  • The molecular mechanism of vancomycin by ssNMR

    Shadan Geshani – @ShGeshani

    Vancomycin is a clinically-used glycopeptide antibiotic, used for the treatment of severe infections. Vancomycin kills bacteria by targeting cell wall precursors in the bacterial membrane, however, resistance mechanisms against this antibiotic have been widely known in pathogenic species. Molecular details of vancomycin’s action could only be studied in the absence of membranes. A better understanding of the molecular mechanism of vancomycin by ssNMR at atomic level will help to overcome this problem.

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  • NMR metabolomics to detect cancer cell

    Sofia Mariasina and Kamil Aysin – @SMariasina and @Aysin_Kamil

    We study new chromosomal rearrangements possibly causing lung cancer. We take human cell lines and reproduce in vitro mutations found in the tumors of cancer patients and test them for malignant transformation. Since cancer cells metabolism differs significantly from normal one we can use NMR metabolomics to detect malignancy

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  • Understanding Dynamic Exchange using Variable Field NMR

    Jean-Paul Heeb – @jpheeb

    We have been able to reliably chemical shift scale NMR spectra from 500 to 50 MHz for small molecule systems undergoing dynamic exchange (atropisomers). Using this, we can observe coalescence at lower temperatures, plot Eyring graphs and estimate activation parameters with smaller uncertainties than VTNMR alone.

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  • Combining NMR and Computational Methods to Interrogate Rapamycin’s Mysterious Minor Conformer

    Emily Crull – @ECrullPhD

    Rapamycin is a natural product approved to facilitate organ transplantation and treat cancer. Existing in two interconverting species, the major conformer was shown to be the trans amide, while the minor was assumed to be the cis amide isomer. Using NMR and computational chemistry, we have revised this latter assignment.

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  • Composited pulses and dynamical decoupling at zero to low-field NMR

    Sven Bodenstedt@SvenBodenstedt

    We will show procedures of error-tolerant, fast and general spin control of heteronuclear spin systems in zero to low-field environments. Experimental examples include dynamical decoupling of spin decoherence pathways as well as for optimized selective rotations of different spin species.

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  • Catch me if you can – new stopped-flow NMR methods

    Ran Wei@RanWei_NMR

    A new stopped-flow NMR apparatus was constructed to capture the fleeting information from irreversible chemical reactions at the millisecond timescale. With the aid of this technique, we are able to study short-lived intermediates, and evolving reactions that occur beyond the measurement deadtime of traditional NMR experiments (t1/2 = 45 ms).

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  • NMR-based metabolomic profiling of the differential concentration of phytomedicinal compounds in pericarp, skin and seeds of Momordica charantia (bitter melon)

    Sumit Mishra@sumitamu

    Momordica charantia is a medicinal plant which is widely used to treat several diseases. We have identified the phytosterols in the pericarp, skin and seeds parts of M. charantia fruit via NMR spectroscopy. Multivariate statistical analysis showed a clustering of the metabolic profiles of seeds and pericarp, and their clear separation from the metabolic profile of the skin.

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  • Investigation of methyl group rotation barriers in halogen bonded cocrystals via 2H NMR using T1 time constants

    Shubha Gunaga@sgshubha_

    We have studied the dynamics of methyl group rotations experimentally as well theoretically in brominated and chlorinated cocrystals of 2,3,5,6-tetramethylpyrazine. Five novel cocrystals were synthesized and characterized via single crystal and X-ray powder diffraction. 2H NMR spin-echo experiments were carried out over the temperature range of 140 K to 320 K.

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  • Quantitative NMR of chloride by an accurate internal standard approach

    Jared Scott Wood@jaredscottwood

    Quantitative analysis of heteroatoms in small molecule active pharmaceutical ingredients is crucial for the development of modern therapeutics. Here we present a robust and generally applicable 35Cl solution qNMR method to assay the level of chloride in pharmaceutical compounds.

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